Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Nicotiana tabacum

CDS Sequence

CDS ID	lcl\|NW_015953836.1_cds_XP_016492853.1_83022
CDS Infomation	[gene=LOC107812306] [db_xref=GeneID:107812306] [protein=putative E3 ubiquitin-protein ligase LIN isoform X3] [protein_id=XP_016492853.1] [location=join(52248..53212,53259..53958,54656..54934,55033..55060,55144..55780,55985..56133,56926..56969)] [gbkey=CDS]
Sequence	ATGGCCATGTCACTCGAGGACCTCCTCGCTAAGGAAGGATTCGATAGGAAGATGTCAAAA ACAGTGCCTAGAGCTTCATCCGGAACAAAGGCAAGACGTGGACCTATTTACCCACTTCAA GAACCTCATAAACCTGTGTCTTCATCAAGCACAAGAAAAACCGAGAGGACAAAATCTGCT ATCCCGTGGCATGACTTGAAAGATAAGACCCCAAGAGTCAATTTTGCAGACAGGAGGCAA AAGAAGGAAACTAAGCACAGAATGGGCTCGCGTGATCTATCATCGGATGTTAAGAGAATA AGCATTAGTTCTTTTGATGAATTGCTAGCTGCTGATGCTTCTCAAAGCAATGAGATAGTT GAGGTTGGAGAGCGAAATGGTTCGAGATACAATCATATATGCTCAAATCAAACTTACAGA AATGGGAGTGGTGAAGGCAGGCCTTCTAGCAGAAGTGAGGAAGAAGAAGGAAAGCGACAA TCCTTCGGAAAAGATACAAAAGCAACAACAAAATGTCTCAATAATTCTGGTAAACTTCTT TCAGGACATCGAAGCTTTAGAGATGATTATCAGAAACGTATTGAACAGCCTGAGACCTCC TACAGCAGATCAACTAGAAGTTCGCTAACCAACAAAAGTTATGATGCAATTAGAAGCCTA AAAAAAGCTGGCATTGAGCACGCTGCAGTTATTCCTGCTCTTGATGAAGTTGCTGTTCAG GCTGTAATCTCTATCTTGAGTGGATACATAAAACGTTTTCTCGTAGATGAGGATTTTAGG ACATCACTTCGTCACAATAGTTTCGCTTCCCTAAACTTTGTTGGACTAGAAGAAGGCCTC AATACTGAAAGCAAGGTCCTAGCCACTCTTGAACAAGCTATTGAAACAGTAGAAAGAGCT GCAGAGGATTGTGCGAACGAAAAAGAACTTAAGAAAGCCTCACTTCAGCTTAGTGTAATT ACAGGCTTGAATTCGAACGATTTACGAGATGGATTTACTTCTGGTATTCCCAATTCTAAA TTGGCAGCTTGTGCTCATCTGTATCTCGGTGTCACATATAAGATACAGAAGAAGGATCGT ATAGCTGCAAAGCACCTACTGCAAGTGTTCTGTGATTCACCTTTTCAGGCAAGGACTAAT TTGTTGCCTGATTTGTGGGATCACATATTTCTTCGTCATTTTTCAAATTTGAAGGCCTGG TTTGATTCAGAAGCTAATTTTCTTGGTGGTCTACATAATAAGTCAAGGAAGCTGAAGTTT CTTGAAAAAATGTACAATGAAAATCTGGACAACGGTACTTATCAGTTTGCACTTTACTAC AAGGAATGGCTAACTGAAGGGGCTGAGATCCCGTTACTTCCTTCTATTGAAATTCCTTCT GTATCTGTTCAGTATGAAGGTTCCTTTAGTAACTCTTCCCACTTAAGTAGTACTGTTGGT GGTTTCTCACCTCAGCCAGTGGTCAGCAAAAGGTTGTATGATGAAGTGTTCCGTCATTCA CATAAACTAGAAAATGAATCAGAGGAGCACCGGGAAGAAAGCTACGAAGTTAGTGTGAGG AGGTCTTCTAGTTTTGCTGCCGAAAACCTGGTAGCATTGAAATACTCTGCTGAAGTGATT AAGTGCATAGATCATGATGTTGAGCCCGGTGCTATAGTTGATTCATATGGTGCATCAAGA GCTCGGGATGCAGAGGGGGTTTTCGGAATGAATTCTCCAGAAGAAAAAATTTTCATGGAA ATATTTGGAAACTCTGATCTAAAGGAAACAACTCCGTTGAAGTCGAACATGCCAGAATCA TTTGCACCTGCAAATCTGACCGAGTTCATATTCAACAGGATAGCGAAAACAGCTTTTGAG CAAAAGGAGACTGAGGATTCTATCATCCATGCTGCTCCTCCTCTTCTTCTATTCTCGGAA GTTGCTTTGGCTCTTGATTGCACGCCAACTGAGGTACTGCTTCCTGCTCAAGGAGTCGAT TATGAAGATTATGTTGGAAGATCCTCCGCAAACATACCACAGGAATTTATCTGCCCTTTG ACTGGACTTCTTTTTGAAGATCCAGCTACCCTTGAGACTGGCCAAACCTTTGAGAGAGCA TCTATTACAAGCTGGTTTTCTAAAGGAAATAGAGCATGTCCAGTAACGCAAAGATTGTTA GAATGCCAAAGTGTACCCCGTGCTAACTTCTTTTTGAAGCATGTTATCACCAATTGGAAG TCCGAACATTGGAGGCGTCTTCTGACCTATTTCTCTAAAGAAGCAGGCAATTCAGGGAAA CACCGTTGGTTAAAGAATGAAATAGTTGTTTCCGTATTGCAACAACTTCTTATTGTTTTA CATCAGGATGAAAGAAGAGAAACTCTAGAGCAGCTTATATCCCTCGGAAGCTTACAGTTT CTGATCCAGAGATTTAATTATGGAAAGGCAAGGGAGAAGATATGTGTTTCCGGAATTCTT TGCTCTTGCATTGAAGTTGACAATAAATGTAGAAATGTAGTTGCCAGAAATGTTGACAAG ATGTGTCTGCTCAATCTTCTTCAGAATGAAGAGTTGGAATTGAGAAGAAATGCCTTTTCA CTCCTGACTGAACTCATTTGCCTTAACAGGAGAAAAGATGCAAAGTTCTTCATAAAAGGC ATTCACAAAGATAACATAGTCAAAGCAATGCAAGATTTGCTGACATATCTCCAGGATTGT CCATGTGAACAGAGATCCATGGTTGCTTTGCTGCTCTTGCACTTTGATCTTCTAGTAGGT AGACACAGAAATGGCCAACATATACAGAGATGGTGCTGTTGA

Peptide Sequence

PEP ID	XP_016492853.1
PEP Infomation	PREDICTED: putative E3 ubiquitin-protein ligase LIN isoform X3 [Nicotiana tabacum]
Sequence	MAMSLEDLLAKEGFDRKMSKTVPRASSGTKARRGPIYPLQEPHKPVSSSSTRKTERTKSA IPWHDLKDKTPRVNFADRRQKKETKHRMGSRDLSSDVKRISISSFDELLAADASQSNEIV EVGERNGSRYNHICSNQTYRNGSGEGRPSSRSEEEEGKRQSFGKDTKATTKCLNNSGKLL SGHRSFRDDYQKRIEQPETSYSRSTRSSLTNKSYDAIRSLKKAGIEHAAVIPALDEVAVQ AVISILSGYIKRFLVDEDFRTSLRHNSFASLNFVGLEEGLNTESKVLATLEQAIETVERA AEDCANEKELKKASLQLSVITGLNSNDLRDGFTSGIPNSKLAACAHLYLGVTYKIQKKDR IAAKHLLQVFCDSPFQARTNLLPDLWDHIFLRHFSNLKAWFDSEANFLGGLHNKSRKLKF LEKMYNENLDNGTYQFALYYKEWLTEGAEIPLLPSIEIPSVSVQYEGSFSNSSHLSSTVG GFSPQPVVSKRLYDEVFRHSHKLENESEEHREESYEVSVRRSSSFAAENLVALKYSAEVI KCIDHDVEPGAIVDSYGASRARDAEGVFGMNSPEEKIFMEIFGNSDLKETTPLKSNMPES FAPANLTEFIFNRIAKTAFEQKETEDSIIHAAPPLLLFSEVALALDCTPTEVLLPAQGVD YEDYVGRSSANIPQEFICPLTGLLFEDPATLETGQTFERASITSWFSKGNRACPVTQRLL ECQSVPRANFFLKHVITNWKSEHWRRLLTYFSKEAGNSGKHRWLKNEIVVSVLQQLLIVL HQDERRETLEQLISLGSLQFLIQRFNYGKAREKICVSGILCSCIEVDNKCRNVVARNVDK MCLLNLLQNEELELRRNAFSLLTELICLNRRKDAKFFIKGIHKDNIVKAMQDLLTYLQDC PCEQRSMVALLLLHFDLLVGRHRNGQHIQRWCC

Transcript Sequence

Gene sequence data has not been registered.